PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13070-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 339aa    MW: 37967.9 Da    PI: 6.9921
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13070-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151484146
                     TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqk 46
                     +g+W++eEd  l+ +++q G+g                          +W+ Ia+ ++ gRt++++k++w++
  TRIUR3_13070-P1 14 KGPWSPEEDATLKSYIEQNGTGgnwialpqkideedriilslyisigsRWSIIAAQLP-GRTDNDIKNYWNT 84
                     79********************************************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.309990IPR017930Myb domain
SuperFamilySSF466894.3E-151182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-81244IPR009057Homeodomain-like
SMARTSM007178.6E-131388IPR001005SANT/Myb domain
CDDcd001672.50E-81686No hitNo description
Gene3DG3DSA:1.10.10.601.7E-164687IPR009057Homeodomain-like
PfamPF002494.6E-94784IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIDEEDR IILSLYISIG  60
SRWSIIAAQL PGRTDNDIKN YWNTRLKKKL FGKQSRKDQR QHQFARQATN SGHKEEASEG  120
AAGNNGFAAG AYNWHQHAMA MPSRPMPGSM VEGNRIGEGV DESIRKLLFK LGGSSFAALQ  180
APPCLPPPMY GEAPNFVAPS VHTAPLNEGG IHCSGVLPAL ELDESFQFNQ VKLDGLECFF  240
GMGDQSMRWN EECDWRQLRR SAAEQVRHLG TQSEVCVLGV EELKAMDEKY RVLFDAINKQ  300
AGNSRSEVEI KEEIWTTGQG EKKKEKRAIL HHQEKWWLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648050.0AK364805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558752.11e-148PREDICTED: myb-related protein Myb4-like
TrEMBLM7YWK60.0M7YWK6_TRIUA; Transcription factor RAX3
STRINGMLOC_52896.31e-161(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-51myb domain protein 36